Package: pald 0.0.4
pald: Partitioned Local Depth for Community Structure in Data
Implementation of the Partitioned Local Depth (PaLD) approach which provides a measure of local depth and the cohesion of a point to another which (together with a universal threshold for distinguishing strong and weak ties) may be used to reveal local and global structure in data, based on methods described in Berenhaut, Moore, and Melvin (2022) <doi:10.1073/pnas.2003634119>. No extraneous inputs, distributional assumptions, iterative procedures nor optimization criteria are employed. This package includes functions for computing local depths and cohesion as well as flexible functions for plotting community networks and displays of cohesion against distance.
Authors:
pald_0.0.4.tar.gz
pald_0.0.4.zip(r-4.5)pald_0.0.4.zip(r-4.4)pald_0.0.4.zip(r-4.3)
pald_0.0.4.tgz(r-4.5-any)pald_0.0.4.tgz(r-4.4-any)pald_0.0.4.tgz(r-4.3-any)
pald_0.0.4.tar.gz(r-4.5-noble)pald_0.0.4.tar.gz(r-4.4-noble)
pald_0.0.4.tgz(r-4.4-emscripten)pald_0.0.4.tgz(r-4.3-emscripten)
pald.pdf |pald.html✨
pald/json (API)
NEWS
| # Install 'pald' in R: |
| install.packages('pald', repos = c('https://lucymcgowan.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/lucymcgowan/pald/issues
- aggregation - Aggregation
- cognate_dist - Cognate Data Distance Matrix
- cultures - Cultures pairwise dissimilarities
- exdata1 - Example Data 1
- exdata2 - Example Data 2
- exdata3 - Example Data 3
- noisy_circles - Noisy circles
- noisy_moons - Noisy moons
- pald_colors - PaLD Color Palette
- tissue_dist - Tissue Data Distance Matrix
Last updated 10 months agofrom:c21752c80e. Checks:8 OK. Indexed: yes.
| Target | Result | Latest binary |
|---|---|---|
| Doc / Vignettes | OK | Feb 12 2025 |
| R-4.5-win | OK | Feb 12 2025 |
| R-4.5-mac | OK | Feb 12 2025 |
| R-4.5-linux | OK | Feb 12 2025 |
| R-4.4-win | OK | Feb 12 2025 |
| R-4.4-mac | OK | Feb 12 2025 |
| R-4.3-win | OK | Feb 12 2025 |
| R-4.3-mac | OK | Feb 12 2025 |
Exports:any_isolatedas_cohesion_matrixcohesion_matrixcohesion_strongcommunity_clusterscommunity_graphsdist_cohesion_plotlocal_depthspaldplot_community_graphsstrong_threshold
Dependencies:clicpp11glueigraphlatticelifecyclemagrittrMatrixpkgconfigrlangvctrs
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Aggregation | aggregation |
| Any isolated | any_isolated |
| Coerce a matrix to a cohesion matrix object | as_cohesion_matrix |
| Cognate Data Distance Matrix | cognate_dist |
| Cohesion Matrix | cohesion_matrix |
| Cohesion Matrix: Strong Ties | cohesion_strong |
| Community clusters | community_clusters |
| Community Graphs | community_graphs |
| Cultures pairwise dissimilarities | cultures |
| Distance Cohesion Plot | dist_cohesion_plot |
| Example Data 1 | exdata1 |
| Example Data 2 | exdata2 |
| Example Data 3 | exdata3 |
| Local (Community) Depths | local_depths |
| Noisy circles | noisy_circles |
| Noisy moons | noisy_moons |
| Partitioned Local Depth (PaLD) | pald |
| PaLD Color Palette | pald_colors |
| Plot Community Graphs | plot_community_graphs |
| Cohesion Threshold for Strong Ties | strong_threshold |
| Tissue Data Distance Matrix | tissue_dist |
