{
  "_id": "6a0f64e3acfb0bcc41c5cf05",
  "Package": "pald",
  "Title": "Partitioned Local Depth for Community Structure in Data",
  "Version": "0.0.5",
  "Authors@R": "c(person(\"Katherine\", \"Moore\", email = \"kmoore@amherst.edu\", role = c(\"aut\"),\ncomment = c(ORCID = \"0000-0001-6943-2416\")),\nperson(\"Kenneth\", \"Berenhaut\", email = \"berenhks@wfu.edu\", role = c(\"aut\")),\nperson(\"Lucy\", \"D'Agostino McGowan\", email = \"lucydagostino@gmail.com\",\nrole = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0001-7297-9359\")))",
  "Description": "Implementation of the Partitioned Local Depth (PaLD)\napproach which provides a measure of local depth and the\ncohesion of a point to another which (together with a universal\nthreshold for distinguishing strong and weak ties) may be used\nto reveal local and global structure in data, based on methods\ndescribed in Berenhaut, Moore, and Melvin (2022)\n<doi:10.1073/pnas.2003634119>. No extraneous inputs,\ndistributional assumptions, iterative procedures nor\noptimization criteria are employed. This package includes\nfunctions for computing local depths and cohesion as well as\nflexible functions for plotting community networks and displays\nof cohesion against distance.",
  "License": "MIT + file LICENSE",
  "Encoding": "UTF-8",
  "Roxygen": "list(markdown = TRUE)",
  "RoxygenNote": "7.3.2",
  "LazyData": "true",
  "URL": "https://github.com/LucyMcGowan/pald",
  "BugReports": "https://github.com/LucyMcGowan/pald/issues",
  "Config/testthat/edition": "3",
  "Config/pak/sysreqs": "libglpk-dev libxml2-dev",
  "Repository": "https://lucymcgowan.r-universe.dev",
  "Date/Publication": "2025-05-29 23:50:39 UTC",
  "RemoteUrl": "https://github.com/lucymcgowan/pald",
  "RemoteRef": "HEAD",
  "RemoteSha": "084c613ef5a0962a31edc865b2c45cc38a9b1325",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-21 10:12:40 UTC",
    "User": "root"
  },
  "Author": "Katherine Moore [aut] (ORCID: <https://orcid.org/0000-0001-6943-2416>),\nKenneth Berenhaut [aut],\nLucy D'Agostino McGowan [aut, cre] (ORCID:\n<https://orcid.org/0000-0001-7297-9359>)",
  "Maintainer": "Lucy D'Agostino McGowan <lucydagostino@gmail.com>",
  "MD5sum": "0b73fac7b29b9cc08572c9930e0e4ea6",
  "_user": "lucymcgowan",
  "_type": "src",
  "_file": "pald_0.0.5.tar.gz",
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  "_sha256": "8a82a75cfd9de0f084987cb29d6a021a476799cb5c674479c1d0e4194dcf82cb",
  "_created": "2026-05-21T10:12:40.000Z",
  "_published": "2026-05-21T20:02:43.050Z",
  "_distro": "noble",
  "_jobs": [
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      "config": "linux-devel-x86_64",
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  "_buildurl": "https://github.com/r-universe/lucymcgowan/actions/runs/26219591078",
  "_status": "success",
  "_host": "GitHub-Actions",
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  "_commit": {
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    "author": "Lucy D'Agostino McGowan <lucydagostino@gmail.com>",
    "committer": "Lucy D'Agostino McGowan <lucydagostino@gmail.com>",
    "message": "update to components\n",
    "time": 1748562639
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  "_maintainer": {
    "name": "Lucy DAgostino McGowan",
    "email": "lucydagostino@gmail.com",
    "login": "lucymcgowan",
    "description": "Assistant Professor in Statistics • Co-founder @rladies-nashville",
    "uuid": 8431897,
    "orcid": "0000-0001-7297-9359"
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      "version": ">= 2.10",
      "role": "Depends"
    },
    {
      "package": "igraph",
      "role": "Imports"
    },
    {
      "package": "graphics",
      "role": "Imports"
    },
    {
      "package": "glue",
      "role": "Imports"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
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  ],
  "_owner": "lucymcgowan",
  "_selfowned": true,
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  "_updates": [
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      "week": "2025-22",
      "n": 1
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  ],
  "_tags": [],
  "_stars": 6,
  "_contributors": [
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      "user": "lucymcgowan",
      "count": 49,
      "uuid": 8431897
    },
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      "count": 18,
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    }
  ],
  "_userbio": {
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    "type": "user",
    "name": "Lucy D'Agostino McGowan",
    "description": "Assistant Professor in Statistics • Co-founder @rladies-nashville"
  },
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    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/pald"
  },
  "_devurl": "https://github.com/lucymcgowan/pald",
  "_searchresults": 19,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/pald.html",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/lucymcgowan/pald",
  "_realowner": "lucymcgowan",
  "_cranurl": true,
  "_releases": [
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      "version": "0.0.1",
      "date": "2022-04-14"
    },
    {
      "version": "0.0.2",
      "date": "2022-06-03"
    },
    {
      "version": "0.0.3",
      "date": "2023-09-28"
    },
    {
      "version": "0.0.4",
      "date": "2024-04-18"
    },
    {
      "version": "0.0.5",
      "date": "2025-05-30"
    }
  ],
  "_exports": [
    "any_isolated",
    "as_cohesion_matrix",
    "cohesion_matrix",
    "cohesion_strong",
    "community_clusters",
    "community_graphs",
    "dist_cohesion_plot",
    "local_depths",
    "pald",
    "plot_community_graphs",
    "strong_threshold"
  ],
  "_datasets": [
    {
      "name": "aggregation",
      "title": "Aggregation",
      "object": "aggregation",
      "class": [
        "spec_tbl_df",
        "tbl_df",
        "tbl",
        "data.frame"
      ],
      "fields": [
        "x1",
        "x2"
      ],
      "rows": 788,
      "table": true,
      "tojson": true
    },
    {
      "name": "cognate_dist",
      "title": "Cognate Data Distance Matrix",
      "object": "cognate_dist",
      "class": [
        "dist"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    },
    {
      "name": "cultures",
      "title": "Cultures pairwise dissimilarities",
      "object": "cultures",
      "class": [
        "matrix",
        "array"
      ],
      "fields": [
        "Bulgaria",
        "Sweden",
        "CN: Liaoning  Province",
        "CN: Heilongjiang  Province",
        "CN: Shanxi Province",
        "CN: Shaannxi  Province",
        "CN: Hebei Province",
        "CN: Beijing",
        "CN: Jiangsu  Province",
        "CN: Fujian  Province",
        "CN: Shandong  Province",
        "CN: Zhejiang  Province",
        "CN: Shanghai",
        "CN: Guangdong  Province",
        "CN: Hunan  Province",
        "CN: Hubei  Province",
        "CN: Henan  Province",
        "CN: Jiangxi  Province",
        "CN: Anhui  Province",
        "CN: Guizhou Province",
        "CN: Guangxi  Province",
        "Cyprus",
        "Finland",
        "Italy",
        "Poland",
        "Romania",
        "Slovenia",
        "Great Britain",
        "France",
        "Germany",
        "IN: Assam",
        "IN: Karnataka",
        "IN: Punjab",
        "IN: Kerala",
        "IN: Orrisa",
        "IN: Andhra Pradesh",
        "IN: Bihar",
        "IN: Gujarat",
        "IN: Madhya Pradesh",
        "IN: Maharashtra",
        "IN: Rajasthan",
        "IN: Tamil Nadu",
        "IN: Uttar Pradesh",
        "IN: West Bengal",
        "Netherlands",
        "Spain",
        "US: West North Central",
        "US: East South Central",
        "US: South Atlantic",
        "US: Middle Atlantic States",
        "US: East North Central",
        "US: New England",
        "US: West South Central",
        "US: Rocky Mountain state",
        "US: California",
        "Hungary",
        "US: Pacific",
        "Estonia",
        "CN: Gansu"
      ],
      "rows": 59,
      "table": true,
      "tojson": true
    },
    {
      "name": "exdata1",
      "title": "Example Data 1",
      "object": "exdata1",
      "class": [
        "tbl_df",
        "tbl",
        "data.frame"
      ],
      "fields": [
        "x1",
        "x2"
      ],
      "rows": 8,
      "table": true,
      "tojson": true
    },
    {
      "name": "exdata2",
      "title": "Example Data 2",
      "object": "exdata2",
      "class": [
        "tbl_df",
        "tbl",
        "data.frame"
      ],
      "fields": [
        "x1",
        "x2"
      ],
      "rows": 16,
      "table": true,
      "tojson": true
    },
    {
      "name": "exdata3",
      "title": "Example Data 3",
      "object": "exdata3",
      "class": [
        "tbl_df",
        "tbl",
        "data.frame"
      ],
      "fields": [
        "x1",
        "x2"
      ],
      "rows": 240,
      "table": true,
      "tojson": true
    },
    {
      "name": "noisy_circles",
      "title": "Noisy circles",
      "object": "noisy_circles",
      "class": [
        "spec_tbl_df",
        "tbl_df",
        "tbl",
        "data.frame"
      ],
      "fields": [
        "x1",
        "x2"
      ],
      "rows": 500,
      "table": true,
      "tojson": true
    },
    {
      "name": "noisy_moons",
      "title": "Noisy moons",
      "object": "noisy_moons",
      "class": [
        "spec_tbl_df",
        "tbl_df",
        "tbl",
        "data.frame"
      ],
      "fields": [
        "x1",
        "x2"
      ],
      "rows": 500,
      "table": true,
      "tojson": true
    },
    {
      "name": "pald_colors",
      "title": "PaLD Color Palette",
      "object": "pald_colors",
      "class": [
        "character"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "tissue_dist",
      "title": "Tissue Data Distance Matrix",
      "object": "tissue_dist",
      "class": [
        "dist"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    }
  ],
  "_help": [
    {
      "page": "aggregation",
      "title": "Aggregation",
      "topics": [
        "aggregation"
      ]
    },
    {
      "page": "any_isolated",
      "title": "Any isolated",
      "topics": [
        "any_isolated"
      ]
    },
    {
      "page": "as_cohesion_matrix",
      "title": "Coerce a matrix to a cohesion matrix object",
      "topics": [
        "as_cohesion_matrix"
      ]
    },
    {
      "page": "cognate_dist",
      "title": "Cognate Data Distance Matrix",
      "topics": [
        "cognate_dist"
      ]
    },
    {
      "page": "cohesion_matrix",
      "title": "Cohesion Matrix",
      "topics": [
        "cohesion_matrix"
      ]
    },
    {
      "page": "cohesion_strong",
      "title": "Cohesion Matrix: Strong Ties",
      "topics": [
        "cohesion_strong"
      ]
    },
    {
      "page": "community_clusters",
      "title": "Community clusters",
      "topics": [
        "community_clusters"
      ]
    },
    {
      "page": "community_graphs",
      "title": "Community Graphs",
      "topics": [
        "community_graphs"
      ]
    },
    {
      "page": "cultures",
      "title": "Cultures pairwise dissimilarities",
      "topics": [
        "cultures"
      ]
    },
    {
      "page": "dist_cohesion_plot",
      "title": "Distance Cohesion Plot",
      "topics": [
        "dist_cohesion_plot"
      ]
    },
    {
      "page": "exdata1",
      "title": "Example Data 1",
      "topics": [
        "exdata1"
      ]
    },
    {
      "page": "exdata2",
      "title": "Example Data 2",
      "topics": [
        "exdata2"
      ]
    },
    {
      "page": "exdata3",
      "title": "Example Data 3",
      "topics": [
        "exdata3"
      ]
    },
    {
      "page": "local_depths",
      "title": "Local (Community) Depths",
      "topics": [
        "local_depths"
      ]
    },
    {
      "page": "noisy_circles",
      "title": "Noisy circles",
      "topics": [
        "noisy_circles"
      ]
    },
    {
      "page": "noisy_moons",
      "title": "Noisy moons",
      "topics": [
        "noisy_moons"
      ]
    },
    {
      "page": "pald",
      "title": "Partitioned Local Depth (PaLD)",
      "topics": [
        "pald"
      ]
    },
    {
      "page": "pald_colors",
      "title": "PaLD Color Palette",
      "topics": [
        "pald_colors"
      ]
    },
    {
      "page": "plot_community_graphs",
      "title": "Plot Community Graphs",
      "topics": [
        "plot_community_graphs"
      ]
    },
    {
      "page": "strong_threshold",
      "title": "Cohesion Threshold for Strong Ties",
      "topics": [
        "strong_threshold"
      ]
    },
    {
      "page": "tissue_dist",
      "title": "Tissue Data Distance Matrix",
      "topics": [
        "tissue_dist"
      ]
    }
  ],
  "_readme": "https://github.com/lucymcgowan/pald/raw/HEAD/README.md",
  "_rundeps": [
    "cli",
    "cpp11",
    "glue",
    "igraph",
    "lattice",
    "lifecycle",
    "magrittr",
    "Matrix",
    "pkgconfig",
    "rlang",
    "vctrs"
  ],
  "_score": 3.7558748556724915,
  "_indexed": true,
  "_nocasepkg": "pald",
  "_universes": [
    "lucymcgowan"
  ],
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}